Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10501
Genomic locus:	chr5:136111396-136151564
Size/Length:	40168 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_146002
Gene Symbol:	Rhbdd2
Chromosome:	chr5
TSS:	136108523 (Transcription start site)
TES:	136122246 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:136111396-136151564
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10501

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036525	mSE_10501	chr5	136111396	136112962	1566	228.47
CM036526	mSE_10501	chr5	136118508	136119478	970	158.14
CM036527	mSE_10501	chr5	136119556	136120276	720	92.66
CM036528	mSE_10501	chr5	136131846	136133417	1571	856.8
CM036529	mSE_10501	chr5	136133423	136134201	778	686.68
CM036530	mSE_10501	chr5	136135666	136138610	2944	808.08
CM036531	mSE_10501	chr5	136139872	136140556	684	137.54
CM036532	mSE_10501	chr5	136149844	136151564	1720	174.44