Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10505
Genomic locus:	chr14:106250185-106270008
Size/Length:	19823 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011897
Gene Symbol:	Spry2
Chromosome:	chr14
TSS:	106291163 (Transcription start site)
TES:	106296036 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:106250185-106270008
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10505

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034652	mSE_10505	chr14	106250185	106251469	1284	1334.27
CM034653	mSE_10505	chr14	106257176	106260261	3085	1838
CM034654	mSE_10505	chr14	106260772	106262279	1507	1748.04
CM034655	mSE_10505	chr14	106263554	106265132	1578	666.57
CM034656	mSE_10505	chr14	106269373	106270008	635	203.9