Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10508
Genomic locus:	chr11:96670318-96693445
Size/Length:	23127 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001130450
Gene Symbol:	Nfe2l1
Chromosome:	chr11
TSS:	96678727 (Transcription start site)
TES:	96690816 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:96670318-96693445
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10508

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034082	mSE_10508	chr11	96670318	96670879	561	141.81
CM034083	mSE_10508	chr11	96683054	96685359	2305	758.72
CM034084	mSE_10508	chr11	96685482	96687064	1582	559.31
CM034085	mSE_10508	chr11	96690236	96691425	1189	145.84
CM034086	mSE_10508	chr11	96691475	96692523	1048	649.14
CM034087	mSE_10508	chr11	96692588	96693445	857	501.97