Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10509
Genomic locus:	chr15:81781296-81800592
Size/Length:	19296 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001282041
Gene Symbol:	Pmm1
Chromosome:	chr15
TSS:	81781535 (Transcription start site)
TES:	81791360 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:81781296-81800592
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10509

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034775	mSE_10509	chr15	81781296	81782844	1548	100.9
CM034776	mSE_10509	chr15	81788889	81791311	2422	671.6
CM034777	mSE_10509	chr15	81791565	81792465	900	232
CM034778	mSE_10509	chr15	81795125	81795991	866	236.28
CM034779	mSE_10509	chr15	81796188	81800014	3826	2449.46
CM034780	mSE_10509	chr15	81800073	81800592	519	223.46