Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10514
Genomic locus:	chr1:133036812-133058809
Size/Length:	21997 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Lgtn
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:133036812-133058809
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10514

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033434	mSE_10514	chr1	133036812	133037547	735	256.23
CM033435	mSE_10514	chr1	133040865	133041312	447	189.57
CM033436	mSE_10514	chr1	133042923	133043369	446	125.45
CM033437	mSE_10514	chr1	133043443	133047096	3653	2453.8
CM033438	mSE_10514	chr1	133054641	133055424	783	201.91
CM033439	mSE_10514	chr1	133056798	133058809	2011	473.1