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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10515
Genomic locus: chr1:137081863-137115215
Size/Length: 33352 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_134438
Gene Symbol: Gpr37l1
Chromosome: chr1
TSS: 137056826 (Transcription start site)
TES: 137064258 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:137081863-137115215
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10515

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033481 mSE_10515 chr1 137081863 137083787 1924 405.83
CM033482 mSE_10515 chr1 137085629 137086170 541 97.96
CM033483 mSE_10515 chr1 137087030 137087933 903 122.46
CM033484 mSE_10515 chr1 137090023 137091154 1131 280.73
CM033485 mSE_10515 chr1 137094194 137096786 2592 585.82
CM033486 mSE_10515 chr1 137100893 137102454 1561 115.03
CM033487 mSE_10515 chr1 137112977 137115215 2238 797.58