Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10517
Genomic locus:	chr1:172818115-172827370
Size/Length:	9255 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_023173
Gene Symbol:	Dusp12
Chromosome:	chr1
TSS:	172804318 (Transcription start site)
TES:	172815671 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:172818115-172827370
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10517

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033547	mSE_10517	chr1	172818115	172821152	3037	2642.79
CM033548	mSE_10517	chr1	172821566	172823927	2361	2863.97
CM033549	mSE_10517	chr1	172824106	172825526	1420	848.14
CM033550	mSE_10517	chr1	172826532	172827370	838	225.23