Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10518
Genomic locus:	chr5:22907511-22941617
Size/Length:	34106 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Mll5
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:22907511-22941617
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10518

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036334	mSE_10518	chr5	22907511	22908124	613	120.29
CM036335	mSE_10518	chr5	22913961	22914588	627	123.67
CM036336	mSE_10518	chr5	22918610	22919157	547	121.34
CM036337	mSE_10518	chr5	22919209	22920415	1206	276.64
CM036338	mSE_10518	chr5	22923866	22925693	1827	378.12
CM036339	mSE_10518	chr5	22938103	22941617	3514	1718.17