Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10522
Genomic locus:	chr2:84643636-84651946
Size/Length:	8310 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019949
Gene Symbol:	Ube2l6
Chromosome:	chr2
TSS:	84638984 (Transcription start site)
TES:	84650160 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:84643636-84651946
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10522

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035594	mSE_10522	chr2	84643636	84644289	653	92.17
CM035595	mSE_10522	chr2	84645949	84649773	3824	3100
CM035596	mSE_10522	chr2	84650107	84651946	1839	1393.07