Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10526
Genomic locus:	chr2:157200199-157221992
Size/Length:	21793 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026968
Gene Symbol:	Manbal
Chromosome:	chr2
TSS:	157193329 (Transcription start site)
TES:	157222499 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:157200199-157221992
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10526

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035668	mSE_10526	chr2	157200199	157200480	281	105.96
CM035669	mSE_10526	chr2	157200826	157202744	1918	1980.12
CM035670	mSE_10526	chr2	157202814	157203341	527	344.2
CM035671	mSE_10526	chr2	157203459	157204626	1167	178.68
CM035672	mSE_10526	chr2	157216999	157221992	4993	1149.52