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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10528
Genomic locus: chr8:87992579-88007453
Size/Length: 14874 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_173866
Gene Symbol: Gpt2
Chromosome: chr8
TSS: 88016515 (Transcription start site)
TES: 88051457 (Transcription end site)
Strand: +
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:87992579-88007453
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10528

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037255 mSE_10528 chr8 87992579 87994033 1454 673.38
CM037256 mSE_10528 chr8 87994703 87995840 1137 180.15
CM037257 mSE_10528 chr8 87995911 87998478 2567 3100
CM037258 mSE_10528 chr8 88001796 88002968 1172 191.89
CM037259 mSE_10528 chr8 88005501 88007453 1952 370.9