Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10531
Genomic locus:	chr2:164255659-164283936
Size/Length:	28277 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011521
Gene Symbol:	Sdc4
Chromosome:	chr2
TSS:	164249746 (Transcription start site)
TES:	164268688 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:164255659-164283936
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10531

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035694	mSE_10531	chr2	164255659	164257046	1387	318.07
CM035695	mSE_10531	chr2	164257137	164259578	2441	276.34
CM035696	mSE_10531	chr2	164259687	164262260	2573	220.76
CM035697	mSE_10531	chr2	164268835	164269830	995	256.42
CM035698	mSE_10531	chr2	164269866	164271681	1815	423.29
CM035699	mSE_10531	chr2	164276999	164280970	3971	941.71
CM035700	mSE_10531	chr2	164281882	164282945	1063	221.96
CM035701	mSE_10531	chr2	164283021	164283936	915	174.8