Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10534
Genomic locus:	chr11:102434561-102457435
Size/Length:	22874 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_020510
Gene Symbol:	Fzd2
Chromosome:	chr11
TSS:	102465744 (Transcription start site)
TES:	102469372 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:102434561-102457435
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10534

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034174	mSE_10534	chr11	102434561	102435105	544	165.91
CM034175	mSE_10534	chr11	102438181	102439008	827	219.14
CM034176	mSE_10534	chr11	102439381	102441733	2352	737.42
CM034177	mSE_10534	chr11	102442527	102445750	3223	1884.82
CM034178	mSE_10534	chr11	102455927	102457435	1508	181.24