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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10536
Genomic locus: chr4:149603567-149635860
Size/Length: 32293 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: Gm5506
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:149603567-149635860
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10536

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036304 mSE_10536 chr4 149603567 149605678 2111 367.06
CM036305 mSE_10536 chr4 149610247 149611227 980 200.93
CM036306 mSE_10536 chr4 149611341 149614495 3154 1493.43
CM036307 mSE_10536 chr4 149615034 149616734 1700 157.46
CM036308 mSE_10536 chr4 149624567 149625683 1116 179.99
CM036309 mSE_10536 chr4 149633792 149634861 1069 158.54
CM036310 mSE_10536 chr4 149634869 149635860 991 176.09