Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10537
Genomic locus:	chr14:35108978-35137807
Size/Length:	28829 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_029389
Gene Symbol:	Fam35a
Chromosome:	chr14
TSS:	35050220 (Transcription start site)
TES:	35123689 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:35108978-35137807
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10537

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034552	mSE_10537	chr14	35108978	35109434	456	130.73
CM034553	mSE_10537	chr14	35109487	35109878	391	171.84
CM034554	mSE_10537	chr14	35110318	35111414	1096	252.53
CM034555	mSE_10537	chr14	35111471	35112446	975	512.97
CM034556	mSE_10537	chr14	35116017	35118149	2132	743.88
CM034557	mSE_10537	chr14	35122976	35123741	765	578.1
CM034558	mSE_10537	chr14	35123826	35125186	1360	163.62
CM034559	mSE_10537	chr14	35125481	35125895	414	234.51
CM034560	mSE_10537	chr14	35126070	35126936	866	377.31
CM034561	mSE_10537	chr14	35127124	35127768	644	145.18
CM034562	mSE_10537	chr14	35136378	35137807	1429	331.1