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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10538
Genomic locus: chr8:81059685-81081867
Size/Length: 22182 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001282109
Gene Symbol: Slc10a7
Chromosome: chr8
TSS: 81033226 (Transcription start site)
TES: 81257911 (Transcription end site)
Strand: +
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:81059685-81081867
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10538

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037233 mSE_10538 chr8 81059685 81060245 560 98.34
CM037234 mSE_10538 chr8 81060523 81062789 2266 2047.96
CM037235 mSE_10538 chr8 81065618 81066757 1139 314.54
CM037236 mSE_10538 chr8 81066815 81068052 1237 579.07
CM037237 mSE_10538 chr8 81068145 81069120 975 291.29
CM037238 mSE_10538 chr8 81070868 81071707 839 195.42
CM037239 mSE_10538 chr8 81079802 81081867 2065 784.47