Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10543
Genomic locus:	chr13:114628453-114656147
Size/Length:	27694 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_172595
Gene Symbol:	Arl15
Chromosome:	chr13
TSS:	114584715 (Transcription start site)
TES:	114947669 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:114628453-114656147
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10543

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034522	mSE_10543	chr13	114628453	114630379	1926	522.76
CM034523	mSE_10543	chr13	114634411	114637217	2806	261.29
CM034524	mSE_10543	chr13	114640282	114642153	1871	895.71
CM034525	mSE_10543	chr13	114645699	114646494	795	95.9
CM034526	mSE_10543	chr13	114646501	114646955	454	145.76
CM034527	mSE_10543	chr13	114649055	114649943	888	195.79
CM034528	mSE_10543	chr13	114650763	114652283	1520	98.86
CM034529	mSE_10543	chr13	114654356	114655299	943	194.64
CM034530	mSE_10543	chr13	114655680	114656147	467	100.32