Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10544
Genomic locus:	chr9:21644808-21671691
Size/Length:	26883 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_177030
Gene Symbol:	Dock6
Chromosome:	chr9
TSS:	21604623 (Transcription start site)
TES:	21657079 (Transcription end site)
Strand:	-
Number of Exons:	50
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:21644808-21671691
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10544

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037414	mSE_10544	chr9	21644808	21645731	923	115.83
CM037415	mSE_10544	chr9	21650057	21653665	3608	1284.91
CM037416	mSE_10544	chr9	21653802	21656081	2279	755.05
CM037417	mSE_10544	chr9	21665023	21665779	756	135.05
CM037418	mSE_10544	chr9	21670395	21671691	1296	212.76