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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10547
Genomic locus: chr11:30648540-30661991
Size/Length: 13451 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_134013
Gene Symbol: Psme4
Chromosome: chr11
TSS: 30671774 (Transcription start site)
TES: 30780361 (Transcription end site)
Strand: +
Number of Exons: 47
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:30648540-30661991
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10547

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033895 mSE_10547 chr11 30648540 30649711 1171 1718.39
CM033896 mSE_10547 chr11 30649743 30651302 1559 3100
CM033897 mSE_10547 chr11 30651593 30652876 1283 674.01
CM033898 mSE_10547 chr11 30652996 30653403 407 111.74
CM033899 mSE_10547 chr11 30660344 30660949 605 240.4
CM033900 mSE_10547 chr11 30661343 30661991 648 287.71