Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10548
Genomic locus:	chr10:114632363-114658316
Size/Length:	25953 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_173391
Gene Symbol:	Tph2
Chromosome:	chr12
TSS:	72332625 (Transcription start site)
TES:	72426221 (Transcription end site)
Strand:	+
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10548

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033762	mSE_10548	chr10	114632363	114633521	1158	331.61
CM033763	mSE_10548	chr10	114636454	114638805	2351	3100
CM033764	mSE_10548	chr10	114639920	114640439	519	92.38
CM033765	mSE_10548	chr10	114648604	114649713	1109	140.62
CM033766	mSE_10548	chr10	114657900	114658316	416	121.34