Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10550
Genomic locus:	chr15:78881244-78909391
Size/Length:	28147 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_144849
Gene Symbol:	Ankrd54
Chromosome:	chr15
TSS:	78883523 (Transcription start site)
TES:	78893289 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:78881244-78909391
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10550

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034756	mSE_10550	chr15	78881244	78883619	2375	707.72
CM034757	mSE_10550	chr15	78895020	78896550	1530	435.92
CM034758	mSE_10550	chr15	78902110	78902935	825	105.79
CM034759	mSE_10550	chr15	78903235	78903681	446	126.72
CM034760	mSE_10550	chr15	78904052	78906497	2445	1052.89
CM034761	mSE_10550	chr15	78907987	78909391	1404	249.63