Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10555
Genomic locus:	chr6:124732344-124757118
Size/Length:	24774 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001306050
Gene Symbol:	Spsb2
Chromosome:	chr6
TSS:	124758678 (Transcription start site)
TES:	124760634 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:124732344-124757118
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10555

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036683	mSE_10555	chr6	124732344	124733226	882	258.4
CM036684	mSE_10555	chr6	124739234	124740203	969	96.83
CM036685	mSE_10555	chr6	124745597	124747178	1581	1523.57
CM036686	mSE_10555	chr6	124752489	124753027	538	618.41
CM036687	mSE_10555	chr6	124753329	124753933	604	178.65
CM036688	mSE_10555	chr6	124754337	124757118	2781	1917.81