Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10560
Genomic locus:	chr17:80881718-80901449
Size/Length:	19731 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009231
Gene Symbol:	Sos1
Chromosome:	chr17
TSS:	80793091 (Transcription start site)
TES:	80879793 (Transcription end site)
Strand:	-
Number of Exons:	22
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:80881718-80901449
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10560

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035192	mSE_10560	chr17	80881718	80883148	1430	288.25
CM035193	mSE_10560	chr17	80895516	80897754	2238	2008.63
CM035194	mSE_10560	chr17	80897991	80901449	3458	1505.71