Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10562
Genomic locus:	chr2:30976744-30992150
Size/Length:	15406 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_019406
Gene Symbol:	Fnbp1
Chromosome:	chr2
TSS:	30908754 (Transcription start site)
TES:	30997528 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:30976744-30992150
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10562

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035517	mSE_10562	chr2	30976744	30977440	696	152.37
CM035518	mSE_10562	chr2	30977748	30979304	1556	346.95
CM035519	mSE_10562	chr2	30982079	30983293	1214	373.7
CM035520	mSE_10562	chr2	30983355	30985135	1780	1195.97
CM035521	mSE_10562	chr2	30985296	30987313	2017	462.62
CM035522	mSE_10562	chr2	30988981	30989828	847	101.14
CM035523	mSE_10562	chr2	30990302	30992150	1848	189.68