Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10573
Genomic locus:	chr3:86643835-86667728
Size/Length:	23893 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_027539
Gene Symbol:	Dclk2
Chromosome:	chr3
TSS:	86590071 (Transcription start site)
TES:	86724806 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:86643835-86667728
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10573

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035833	mSE_10573	chr3	86643835	86644337	502	113.83
CM035834	mSE_10573	chr3	86644448	86645295	847	450.58
CM035835	mSE_10573	chr3	86645558	86646012	454	218.96
CM035836	mSE_10573	chr3	86646142	86647179	1037	655.37
CM035837	mSE_10573	chr3	86647338	86648078	740	424.19
CM035838	mSE_10573	chr3	86648466	86650196	1730	1236.21
CM035839	mSE_10573	chr3	86650496	86651643	1147	787.15
CM035840	mSE_10573	chr3	86651693	86652473	780	572.43
CM035841	mSE_10573	chr3	86656054	86657867	1813	263.07
CM035842	mSE_10573	chr3	86667121	86667728	607	149.28