Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10574
Genomic locus:	chr14:8671979-8685706
Size/Length:	13727 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081427
Gene Symbol:	Flnb
Chromosome:	chr14
TSS:	8650470 (Transcription start site)
TES:	8784101 (Transcription end site)
Strand:	+
Number of Exons:	46
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr14:8671979-8685706
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10574

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034531	mSE_10574	chr14	8671979	8674509	2530	515.7
CM034532	mSE_10574	chr14	8679063	8681653	2590	1077.11
CM034533	mSE_10574	chr14	8682669	8683116	447	182.39
CM034534	mSE_10574	chr14	8683189	8685706	2517	2766.79