Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10580
Genomic locus:	chr2:164684661-164703359
Size/Length:	18698 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011125
Gene Symbol:	Pltp
Chromosome:	chr2
TSS:	164665017 (Transcription start site)
TES:	164683208 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:164684661-164703359
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10580

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035702	mSE_10580	chr2	164684661	164685733	1072	351.07
CM035703	mSE_10580	chr2	164687055	164687871	816	172.55
CM035704	mSE_10580	chr2	164689820	164690642	822	145.8
CM035705	mSE_10580	chr2	164691937	164693854	1917	958.89
CM035706	mSE_10580	chr2	164698954	164701112	2158	1862.85
CM035707	mSE_10580	chr2	164702520	164703359	839	228.13