Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10583
Genomic locus:	chr11:96632217-96650387
Size/Length:	18170 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001163389
Gene Symbol:	Snx11
Chromosome:	chr11
TSS:	96628862 (Transcription start site)
TES:	96638869 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:96632217-96650387
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10583

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034074	mSE_10583	chr11	96632217	96633963	1746	342.1
CM034075	mSE_10583	chr11	96637774	96638930	1156	130.92
CM034076	mSE_10583	chr11	96638937	96639656	719	171.27
CM034077	mSE_10583	chr11	96640028	96641097	1069	175.49
CM034078	mSE_10583	chr11	96641223	96642937	1714	1069.15
CM034079	mSE_10583	chr11	96645135	96646032	897	118.16
CM034080	mSE_10583	chr11	96646980	96647808	828	486.6
CM034081	mSE_10583	chr11	96647915	96650387	2472	1412.82