Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10588
Genomic locus:	chr6:140551258-140572100
Size/Length:	20842 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001309436
Gene Symbol:	Aebp2
Chromosome:	chr6
TSS:	140575405 (Transcription start site)
TES:	140604002 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:140551258-140572100
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10588

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036734	mSE_10588	chr6	140551258	140551879	621	100.48
CM036735	mSE_10588	chr6	140552012	140552829	817	310.61
CM036736	mSE_10588	chr6	140554445	140555440	995	147.51
CM036737	mSE_10588	chr6	140566022	140566810	788	293.98
CM036738	mSE_10588	chr6	140567631	140569072	1441	647.48
CM036739	mSE_10588	chr6	140569080	140572100	3020	1797.48