Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10589
Genomic locus:	chr11:76269727-76298338
Size/Length:	28611 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_198018
Gene Symbol:	Abr
Chromosome:	chr11
TSS:	76230233 (Transcription start site)
TES:	76322921 (Transcription end site)
Strand:	-
Number of Exons:	22
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:76269727-76298338
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10589

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033977	mSE_10589	chr11	76269727	76271416	1689	136.71
CM033978	mSE_10589	chr11	76282011	76283131	1120	143.18
CM033979	mSE_10589	chr11	76289744	76291607	1863	559.38
CM033980	mSE_10589	chr11	76294916	76298338	3422	2119.64