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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10591
Genomic locus: chr1:63245738-63259125
Size/Length: 13387 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_146250
Gene Symbol: Gpr1
Chromosome: chr1
TSS: 63229144 (Transcription start site)
TES: 63260855 (Transcription end site)
Strand: -
Number of Exons: 3
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:63245738-63259125
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10591

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033350 mSE_10591 chr1 63245738 63247648 1910 1426.74
CM033351 mSE_10591 chr1 63248241 63248982 741 246.03
CM033352 mSE_10591 chr1 63249589 63252318 2729 689.81
CM033353 mSE_10591 chr1 63253956 63254669 713 181.15
CM033354 mSE_10591 chr1 63256162 63257899 1737 962.14
CM033355 mSE_10591 chr1 63258498 63259125 627 113.9