Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10593
Genomic locus:	chr17:28215347-28227311
Size/Length:	11964 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001085555
Gene Symbol:	Tcp11
Chromosome:	chr17
TSS:	28203691 (Transcription start site)
TES:	28217584 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:28215347-28227311
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10593

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035030	mSE_10593	chr17	28215347	28216640	1293	453.07
CM035031	mSE_10593	chr17	28218351	28219356	1005	171.74
CM035032	mSE_10593	chr17	28221150	28223339	2189	309.53
CM035033	mSE_10593	chr17	28223967	28226661	2694	2274.07
CM035034	mSE_10593	chr17	28226816	28227311	495	121.82