Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10595
Genomic locus:	chr1:63179994-63187735
Size/Length:	7741 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001081436
Gene Symbol:	Ino80d
Chromosome:	chr1
TSS:	63094374 (Transcription start site)
TES:	63160841 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:63179994-63187735
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10595

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033344	mSE_10595	chr1	63179994	63180566	572	134.19
CM033345	mSE_10595	chr1	63181026	63181575	549	206.2
CM033346	mSE_10595	chr1	63182620	63184351	1731	1361.19
CM033347	mSE_10595	chr1	63184372	63185441	1069	1502.04
CM033348	mSE_10595	chr1	63185450	63187257	1807	2089.15
CM033349	mSE_10595	chr1	63187303	63187735	432	153.51