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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10598
Genomic locus: chr13:112321776-112344322
Size/Length: 22546 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001122963
Gene Symbol: Gpbp1
Chromosome: chr13
TSS: 112215887 (Transcription start site)
TES: 112280249 (Transcription end site)
Strand: -
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr13:112321776-112344322
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10598

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034511 mSE_10598 chr13 112321776 112323869 2093 969.37
CM034512 mSE_10598 chr13 112324198 112325696 1498 793.96
CM034513 mSE_10598 chr13 112326250 112327247 997 309.59
CM034514 mSE_10598 chr13 112327452 112328721 1269 147.22
CM034515 mSE_10598 chr13 112330747 112331635 888 335.47
CM034516 mSE_10598 chr13 112331647 112333063 1416 392.96
CM034517 mSE_10598 chr13 112342282 112344322 2040 588