Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10600
Genomic locus: chr1:63152242-63165341
Size/Length: 13099 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001081436
Gene Symbol: Ino80d
Chromosome: chr1
TSS: 63094374 (Transcription start site)
TES: 63160841 (Transcription end site)
Strand: -
Number of Exons: 12
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:63152242-63165341
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10600

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033336 mSE_10600 chr1 63152242 63153715 1473 445.92
CM033337 mSE_10600 chr1 63154036 63155850 1814 1469.04
CM033338 mSE_10600 chr1 63156378 63157831 1453 580.26
CM033339 mSE_10600 chr1 63158706 63160535 1829 762.17
CM033340 mSE_10600 chr1 63160765 63161807 1042 667.91
CM033341 mSE_10600 chr1 63162122 63162740 618 100.32
CM033342 mSE_10600 chr1 63163105 63163872 767 93.07
CM033343 mSE_10600 chr1 63164524 63165341 817 159.81