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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10603
Genomic locus: chr11:77486114-77501739
Size/Length: 15625 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001024205
Gene Symbol: Nufip2
Chromosome: chr11
TSS: 77499640 (Transcription start site)
TES: 77531468 (Transcription end site)
Strand: +
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:77486114-77501739
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10603

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033981 mSE_10603 chr11 77486114 77487342 1228 676.51
CM033982 mSE_10603 chr11 77487352 77487711 359 106.41
CM033983 mSE_10603 chr11 77487721 77488130 409 210.27
CM033984 mSE_10603 chr11 77491991 77492916 925 535.06
CM033985 mSE_10603 chr11 77492994 77495066 2072 1583.68
CM033986 mSE_10603 chr11 77498994 77500979 1985 989.61
CM033987 mSE_10603 chr11 77501023 77501739 716 219.65