Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10604
Genomic locus:	chr9:64031126-64049718
Size/Length:	18592 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_183316
Gene Symbol:	Snapc5
Chromosome:	chr9
TSS:	64027103 (Transcription start site)
TES:	64030495 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:64031126-64049718
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10604

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037505	mSE_10604	chr9	64031126	64033321	2195	1572.94
CM037506	mSE_10604	chr9	64035788	64037183	1395	144.62
CM037507	mSE_10604	chr9	64044836	64046881	2045	1190.31
CM037508	mSE_10604	chr9	64046965	64048165	1200	743.19
CM037509	mSE_10604	chr9	64048317	64049718	1401	398.63