Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10605
Genomic locus:	chr4:155068673-155092273
Size/Length:	23600 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026899
Gene Symbol:	Ssu72
Chromosome:	chr4
TSS:	155078923 (Transcription start site)
TES:	155107982 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:155068673-155092273
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10605

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036318	mSE_10605	chr4	155068673	155071812	3139	1207.14
CM036319	mSE_10605	chr4	155071872	155072793	921	185.39
CM036320	mSE_10605	chr4	155078477	155080136	1659	489.34
CM036321	mSE_10605	chr4	155083214	155084173	959	198.71
CM036322	mSE_10605	chr4	155084298	155085259	961	343.16
CM036323	mSE_10605	chr4	155091276	155092273	997	106.92