Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10609
Genomic locus:	chr13:34240333-34249770
Size/Length:	9437 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001110515
Gene Symbol:	Psmg4
Chromosome:	chr13
TSS:	34254832 (Transcription start site)
TES:	34270041 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr13:34240333-34249770
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10609

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034406	mSE_10609	chr13	34240333	34242908	2575	814.76
CM034407	mSE_10609	chr13	34243868	34246199	2331	892.75
CM034408	mSE_10609	chr13	34246367	34246892	525	116.96
CM034409	mSE_10609	chr13	34246913	34249770	2857	2293.86