Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10613
Genomic locus:	chr9:30816586-30836357
Size/Length:	19771 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001115130
Gene Symbol:	Zbtb44
Chromosome:	chr9
TSS:	30838228 (Transcription start site)
TES:	30883470 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:30816586-30836357
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10613

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037425	mSE_10613	chr9	30816586	30821059	4473	1452.53
CM037426	mSE_10613	chr9	30823622	30824169	547	100.73
CM037427	mSE_10613	chr9	30824347	30826502	2155	1890.23
CM037428	mSE_10613	chr9	30826724	30827801	1077	238.13
CM037429	mSE_10613	chr9	30835604	30836357	753	173.37