Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10614
Genomic locus:	chr18:12041584-12076541
Size/Length:	34957 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_035447
Gene Symbol:	Mir1901
Chromosome:	chr18
TSS:	11998869 (Transcription start site)
TES:	11998947 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr18:12041584-12076541
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10614

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035223	mSE_10614	chr18	12041584	12045257	3673	1437.77
CM035224	mSE_10614	chr18	12045574	12047221	1647	603.09
CM035225	mSE_10614	chr18	12057455	12059593	2138	776.31
CM035226	mSE_10614	chr18	12068602	12070955	2353	647.54
CM035227	mSE_10614	chr18	12075971	12076541	570	101.91