Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10615
Genomic locus:	chr4:134847846-134870847
Size/Length:	23001 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013885
Gene Symbol:	Clic4
Chromosome:	chr4
TSS:	134769884 (Transcription start site)
TES:	134828675 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:134847846-134870847
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10615

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036227	mSE_10615	chr4	134847846	134848940	1094	297.76
CM036228	mSE_10615	chr4	134855512	134856885	1373	340.75
CM036229	mSE_10615	chr4	134856967	134858138	1171	460.37
CM036230	mSE_10615	chr4	134862083	134864219	2136	667.99
CM036231	mSE_10615	chr4	134864730	134866885	2155	225.47
CM036232	mSE_10615	chr4	134868203	134870847	2644	633.18