Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10617
Genomic locus:	chr17:27687898-27699501
Size/Length:	11603 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001166477
Gene Symbol:	Hmga1-rs1
Chromosome:	chr17
TSS:	27693597 (Transcription start site)
TES:	27700616 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:27687898-27699501
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10617

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035024	mSE_10617	chr17	27687898	27689140	1242	111.26
CM035025	mSE_10617	chr17	27690478	27693505	3027	2719.51
CM035026	mSE_10617	chr17	27693529	27694105	576	136.65
CM035027	mSE_10617	chr17	27694124	27695660	1536	131.55
CM035028	mSE_10617	chr17	27696882	27698022	1140	121.58
CM035029	mSE_10617	chr17	27698252	27699501	1249	386.94