Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10620
Genomic locus:	chr8:90490661-90509447
Size/Length:	18786 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_033327
Gene Symbol:	Zfp423
Chromosome:	chr8
TSS:	90185708 (Transcription start site)
TES:	90483494 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:90490661-90509447
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10620

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037267	mSE_10620	chr8	90490661	90492894	2233	939.54
CM037268	mSE_10620	chr8	90497743	90501173	3430	2434.72
CM037269	mSE_10620	chr8	90506091	90507291	1200	184.88
CM037270	mSE_10620	chr8	90508029	90509447	1418	92.51