Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10623
Genomic locus:	chr16:13740493-13753246
Size/Length:	12753 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011987
Gene Symbol:	Pla2g10
Chromosome:	chr16
TSS:	13715149 (Transcription start site)
TES:	13731076 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:13740493-13753246
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10623

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034877	mSE_10623	chr16	13740493	13742670	2177	556.85
CM034878	mSE_10623	chr16	13743111	13743674	563	118.93
CM034879	mSE_10623	chr16	13747264	13747701	437	112.03
CM034880	mSE_10623	chr16	13747750	13748922	1172	938.76
CM034881	mSE_10623	chr16	13749191	13751003	1812	2320.12
CM034882	mSE_10623	chr16	13751494	13752241	747	236.59
CM034883	mSE_10623	chr16	13752708	13753246	538	170.65