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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10630
Genomic locus: chr9:59500764-59535866
Size/Length: 35102 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: Pkm2
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr9:59500764-59535866
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10630

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037492 mSE_10630 chr9 59500764 59502120 1356 332.16
CM037493 mSE_10630 chr9 59503531 59504124 593 371.41
CM037494 mSE_10630 chr9 59504340 59504907 567 504.27
CM037495 mSE_10630 chr9 59504994 59506737 1743 278.28
CM037496 mSE_10630 chr9 59506750 59508190 1440 142.12
CM037497 mSE_10630 chr9 59515597 59516289 692 107.79
CM037498 mSE_10630 chr9 59522597 59524693 2096 164.31
CM037499 mSE_10630 chr9 59535168 59535866 698 188.46