Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10634
Genomic locus:	chr17:31433091-31464451
Size/Length:	31360 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001242427
Gene Symbol:	Slc37a1
Chromosome:	chr17
TSS:	31433168 (Transcription start site)
TES:	31487643 (Transcription end site)
Strand:	+
Number of Exons:	20
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:31433091-31464451
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10634

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035051	mSE_10634	chr17	31433091	31435056	1965	459.32
CM035052	mSE_10634	chr17	31439997	31441082	1085	149.06
CM035053	mSE_10634	chr17	31441118	31443074	1956	966.86
CM035054	mSE_10634	chr17	31443099	31443942	843	170.14
CM035055	mSE_10634	chr17	31444598	31445874	1276	221.99
CM035056	mSE_10634	chr17	31447702	31448353	651	91.36
CM035057	mSE_10634	chr17	31460038	31460755	717	128.55
CM035058	mSE_10634	chr17	31461702	31464451	2749	484.6