Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10636
Genomic locus:	chr5:122594884-122608123
Size/Length:	13239 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013636
Gene Symbol:	Ppp1cc
Chromosome:	chr5
TSS:	122608287 (Transcription start site)
TES:	122625278 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:122594884-122608123
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10636

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036478	mSE_10636	chr5	122594884	122597792	2908	1150.95
CM036479	mSE_10636	chr5	122597955	122600657	2702	716.74
CM036480	mSE_10636	chr5	122604456	122605940	1484	334.86
CM036481	mSE_10636	chr5	122606209	122608123	1914	796.73