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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10637
Genomic locus: chr6:145011311-145044006
Size/Length: 32695 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001024468
Gene Symbol: Bcat1
Chromosome: chr6
TSS: 144942354 (Transcription start site)
TES: 144997332 (Transcription end site)
Strand: -
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:145011311-145044006
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10637

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036753 mSE_10637 chr6 145011311 145012327 1016 128.51
CM036754 mSE_10637 chr6 145021757 145022548 791 114.08
CM036755 mSE_10637 chr6 145023480 145024907 1427 326.08
CM036756 mSE_10637 chr6 145025855 145028166 2311 397.55
CM036757 mSE_10637 chr6 145032585 145033599 1014 303.65
CM036758 mSE_10637 chr6 145040585 145044006 3421 2274.93