Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10640
Genomic locus:	chr17:46976669-46995705
Size/Length:	19036 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	BC032203
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10640

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035115	mSE_10640	chr17	46976669	46978356	1687	354.24
CM035116	mSE_10640	chr17	46982645	46983856	1211	260.18
CM035117	mSE_10640	chr17	46984011	46985111	1100	213.5
CM035118	mSE_10640	chr17	46989484	46994734	5250	1439.26
CM035119	mSE_10640	chr17	46994929	46995705	776	207.51